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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d5f L41 Peroxisome proliferator-activated receptor delta

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d5f L41Peroxisome proliferator-activated receptor delta / 1.354
2ath 3EAPeroxisome proliferator-activated receptor gamma / 0.824
3gbk 2PQPeroxisome proliferator-activated receptor gamma / 0.717
1y0s 331Peroxisome proliferator-activated receptor delta / 0.696
2hwr DRDPeroxisome proliferator-activated receptor gamma / 0.689
2znq 401Peroxisome proliferator-activated receptor delta / 0.668
3qcl NXVReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.665
4mpc PV2[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.650