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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d2e ATP Heat shock protein homolog SSE1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d2e ATPHeat shock protein homolog SSE1 / 1.253
3chw ATPMajor actin / 0.853
1kxp ATPActin, alpha skeletal muscle / 0.851
3m6g ATPActin, alpha skeletal muscle / 0.837
1nlv ATPMajor actin / 0.833
1wua ATPActin, alpha skeletal muscle / 0.823
4pkg ATPActin, alpha skeletal muscle / 0.817
2v51 ATPActin, alpha skeletal muscle / 0.815
4b9q ATPChaperone protein DnaK / 0.812
1qz5 ATPActin, alpha skeletal muscle / 0.806
1s22 ATPActin, alpha skeletal muscle / 0.805
1c0f ATPMajor actin / 0.804
3a5o ATPMajor actin / 0.803
5ce3 ATPActin / 0.802
3m1f ATPActin, alpha skeletal muscle / 0.801
2p9k ATPActin-related protein 2 / 0.796
1eqy ATPActin, alpha skeletal muscle / 0.791
4k41 ATPActin, alpha skeletal muscle / 0.791
4pl8 ATPActin, alpha skeletal muscle / 0.789
1nm1 ATPMajor actin / 0.778
3eks ATPActin-5C / 0.777
3eku ATPActin-5C / 0.756
1nmd ATPMajor actin / 0.753
4a62 ANPPlasmid segregation protein ParM / 0.753
1ijj ATPActin, alpha skeletal muscle / 0.749
4k42 ADPActin, alpha skeletal muscle / 0.737
4m63 ATPActin-5C / 0.737
4bqz GNPEctonucleoside triphosphate diphosphohydrolase 2 / 0.735
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.734
1atn ATPActin, alpha skeletal muscle / 0.733
2q97 ATPActin, alpha skeletal muscle / 0.713
4pkh ADPActin, alpha skeletal muscle / 0.713
1mdu ATPActin, alpha skeletal muscle / 0.709
4a61 ANPPlasmid segregation protein ParM / 0.709
1yxq ATPActin, alpha skeletal muscle / 0.706
1ats ADPHeat shock cognate 71 kDa protein / 0.703
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.701
3fe1 ADPHeat shock 70 kDa protein 6 / 0.700
1rgi ATPActin, alpha skeletal muscle / 0.699
1ngi ANPHeat shock cognate 71 kDa protein / 0.694
2zgz GNPPlasmid segregation protein ParM / 0.694
5f1x ATP78 kDa glucose-regulated protein / 0.693
3ule ATPActin-related protein 2 / 0.691
1lot ATPActin, alpha skeletal muscle / 0.684
1ngc ADPHeat shock cognate 71 kDa protein / 0.682
1ngd ADPHeat shock cognate 71 kDa protein / 0.682
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.682
1h1v ATPActin, alpha skeletal muscle / 0.681
3el2 ATPActin-5C / 0.681
5f2r ACP78 kDa glucose-regulated protein / 0.672
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.671
1ngb ADPHeat shock cognate 71 kDa protein / 0.668
4br0 AU1Ectonucleoside triphosphate diphosphohydrolase 2 / 0.665
4jhd ANPActin-5C / 0.659
3mn7 ATPActin-5C / 0.658
4ci6 ATPActin / 0.658
3hsc ADPHeat shock cognate 71 kDa protein / 0.652
3w3d ATPActin, gamma-enteric smooth muscle / 0.652
3mn9 ATPActin-5C / 0.650