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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cx5 SMA Cytochrome b

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cx5 SMACytochrome b / 1.483
3cxh SMACytochrome b / 1.439
2ibz SMACytochrome b / 1.300
1kb9 SMACytochrome b / 1.244
1ezv SMACytochrome b / 1.236
2qjy SMACytochrome b / 1.152
1kyo SMACytochrome b / 1.109
2qjp SMACytochrome b / 1.109
1ppj SMACytochrome b / 1.052
1pp9 SMACytochrome b / 0.982
3h1j SMACytochrome b / 0.979
2yiu SMACytochrome b / 0.892
4e5i 0N9Polymerase acidic protein / 0.660
2jbl SMAReaction center protein L chain / 0.658
2puc GUNHTH-type transcriptional repressor PurR / 0.658