Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cvy FAD RE11660p

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cvy FADRE11660p / 1.433
3cvu FADRE11660p / 1.362
2wq7 FADRE11660p / 1.319
2wq6 FADRE11660p / 1.301
2wb2 FADRE11660p / 1.116
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.007
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.979
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.972
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.958
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.957
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.949
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.937
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.934
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.933
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.933
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.929
1u3c FADCryptochrome-1 / 0.929
1u3d FADCryptochrome-1 / 0.926
4i6g FADCryptochrome-2 / 0.918
4jzy FADCryptochrome-1 / 0.910
1np7 FADCryptochrome DASH / 0.901
4cdm FADDeoxyribodipyrimidine photolyase / 0.897
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.876
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.869
4gu5 FADCryptochrome-1 / 0.859
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.829
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.802
4dja FAD(6-4) photolyase / 0.779
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.760
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.685
3tw6 ADPPyruvate carboxylase / 0.685
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.685
1nb9 RBFRiboflavin kinase 2.7.1.26 0.684
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.678
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.677
3rv4 ADPBiotin carboxylase 6.3.4.14 0.676
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.671
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.663
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.658
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.655
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.655
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.654
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.654
2zdg ADPD-alanine--D-alanine ligase / 0.653
1f8w FADNADH peroxidase 1.11.1.1 0.650