Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cvu FAD RE11660p

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cvu FADRE11660p / 1.430
3cvy FADRE11660p / 1.362
2wq7 FADRE11660p / 1.353
2wq6 FADRE11660p / 1.334
2wb2 FADRE11660p / 1.175
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.073
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.010
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 1.006
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.984
4jzy FADCryptochrome-1 / 0.983
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.977
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.964
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.961
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.945
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.944
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.940
1u3c FADCryptochrome-1 / 0.940
1u3d FADCryptochrome-1 / 0.926
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.911
4gu5 FADCryptochrome-1 / 0.905
4i6g FADCryptochrome-2 / 0.903
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.902
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.897
4dja FAD(6-4) photolyase / 0.879
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.876
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.873
1np7 FADCryptochrome DASH / 0.868
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.867
4cdm FADDeoxyribodipyrimidine photolyase / 0.825
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.782
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.725
1nb9 RBFRiboflavin kinase 2.7.1.26 0.698
3tw6 ADPPyruvate carboxylase / 0.698
2vqd AP2Biotin carboxylase 6.3.4.14 0.693
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.692
4ffl ADPUncharacterized protein / 0.687
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.684
3rv4 ADPBiotin carboxylase 6.3.4.14 0.682
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.677
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.674
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.672
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.670
2j9g ADPBiotin carboxylase 6.3.4.14 0.669
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.669
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.665
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.663
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.660
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.658
2zdg ADPD-alanine--D-alanine ligase / 0.656
5c1o ANPD-alanine--D-alanine ligase / 0.656
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.654
1m0w ANPGlutathione synthetase 6.3.2.3 0.651
2bun FADAppA protein / 0.651
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.651
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.650