Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3csc ACO Citrate synthase, mitochondrial 2.3.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3csc ACOCitrate synthase, mitochondrial 2.3.3.1 1.070
5cts CMCCitrate synthase, mitochondrial 2.3.3.1 1.015
1csc CMCCitrate synthase, mitochondrial 2.3.3.1 1.012
6cts CICCitrate synthase, mitochondrial 2.3.3.1 0.925
2cts COACitrate synthase, mitochondrial 2.3.3.1 0.794
1ixe COACitrate synthase / 0.700
2r9e SDXCitrate synthase 2.3.3.16 0.697
2h12 CMXCitrate synthase / 0.681
2r26 CMCCitrate synthase 2.3.3.16 0.664
4l9k EHFSerum albumin / 0.657
1v8l APRADP-ribose pyrophosphatase / 0.652