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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cis ATP Universal stress protein Rv2623

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cis ATPUniversal stress protein Rv2623 / 1.151
2z08 ATPUniversal stress protein family / 0.822
1mjh ATPUniversal stress protein MJ0577 / 0.805
3hgm ATPTRAP-T-associated universal stress protein TeaD / 0.774
3ab8 ATPUncharacterized protein / 0.770
3s3t ATPUniversal stress protein / 0.725
4r2l ATPUniversal stress protein F / 0.725
5ahw CMPUniversal stress protein family protein, putative / 0.663