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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3chw ATP Major actin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3chw ATPMajor actin / 1.158
4b1v ATPActin, alpha skeletal muscle / 1.076
1c0f ATPMajor actin / 1.073
3a5o ATPMajor actin / 1.065
4k41 ATPActin, alpha skeletal muscle / 1.062
1qz5 ATPActin, alpha skeletal muscle / 1.052
1dej ATPMajor actin / 1.048
3mn6 ATPActin-5C / 1.046
4pkg ATPActin, alpha skeletal muscle / 1.036
1s22 ATPActin, alpha skeletal muscle / 1.032
3mn9 ATPActin-5C / 1.030
3eks ATPActin-5C / 1.026
1nlv ATPMajor actin / 1.024
3m6g ATPActin, alpha skeletal muscle / 1.022
1eqy ATPActin, alpha skeletal muscle / 1.009
3w3d ATPActin, gamma-enteric smooth muscle / 1.001
1t44 ATPActin, alpha skeletal muscle / 0.999
2a41 ATPActin, alpha skeletal muscle / 0.995
1wua ATPActin, alpha skeletal muscle / 0.993
2v51 ATPActin, alpha skeletal muscle / 0.991
3eku ATPActin-5C / 0.988
4pl8 ATPActin, alpha skeletal muscle / 0.983
1kxp ATPActin, alpha skeletal muscle / 0.981
3m1f ATPActin, alpha skeletal muscle / 0.972
3el2 ATPActin-5C / 0.960
3mn7 ATPActin-5C / 0.959
2q97 ATPActin, alpha skeletal muscle / 0.957
5ce3 ATPActin / 0.953
4pki ATPActin, alpha skeletal muscle / 0.950
2q36 ATPActin, alpha skeletal muscle / 0.946
1rgi ATPActin, alpha skeletal muscle / 0.937
1ijj ATPActin, alpha skeletal muscle / 0.931
4cbx ATPActin-2 / 0.912
3daw ATPActin, alpha skeletal muscle / 0.911
2p9k ATPActin-related protein 2 / 0.909
2oan ATPActin, cytoplasmic 1 / 0.904
1mdu ATPActin, alpha skeletal muscle / 0.902
3tu5 ATPActin, alpha skeletal muscle / 0.892
3wt0 ATPCell division protein FtsA / 0.885
4pkh ADPActin, alpha skeletal muscle / 0.881
1atn ATPActin, alpha skeletal muscle / 0.861
3d2e ATPHeat shock protein homolog SSE1 / 0.853
4b9q ATPChaperone protein DnaK / 0.843
3ffk ATPActin, alpha skeletal muscle / 0.839
4ci6 ATPActin / 0.834
4m63 ATPActin-5C / 0.825
1lot ATPActin, alpha skeletal muscle / 0.821
1yxq ATPActin, alpha skeletal muscle / 0.800
1nmd ATPMajor actin / 0.786
3ule ATPActin-related protein 2 / 0.786
1nm1 ATPMajor actin / 0.775
1rfq ATPActin, alpha skeletal muscle / 0.771
3a5m ATPMajor actin / 0.766
3wqt ANPCell division protein FtsA / 0.765
4jhd ANPActin-5C / 0.757
4k42 ADPActin, alpha skeletal muscle / 0.748
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.744
1h1v ATPActin, alpha skeletal muscle / 0.739
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.737
1mwm ADPPlasmid segregation protein ParM / 0.716
2e2q ADPATP-dependent hexokinase / 0.715
4k43 ADPActin, alpha skeletal muscle / 0.707
4a62 ANPPlasmid segregation protein ParM / 0.703
2zgz GNPPlasmid segregation protein ParM / 0.698
4a61 ANPPlasmid segregation protein ParM / 0.695
3ldo ANP78 kDa glucose-regulated protein / 0.691
1nge ATPHeat shock cognate 71 kDa protein / 0.689
3u4l ATPActin, cytoplasmic 1 / 0.682
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.682
4rwt ANPActin-5C / 0.672
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.671
4bqz GNPEctonucleoside triphosphate diphosphohydrolase 2 / 0.662
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.662
2zgy GDPPlasmid segregation protein ParM / 0.661
1ngi ANPHeat shock cognate 71 kDa protein / 0.658
2fsn ADPArchaeal actin homolog / 0.654