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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cb2 GDP Tubulin gamma-1 chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cb2 GDPTubulin gamma-1 chain / 1.178
4f6r GDPTubulin beta chain / 1.056
4zol GTPTubulin alpha-1B chain / 0.969
4tuy GTPTubulin alpha-1B chain / 0.966
5la6 GDPTubulin beta-2B chain / 0.957
3ryh GTPTubulin alpha chain / 0.953
5jqg GTPTubulin alpha-1B chain / 0.952
5la6 GTPTubulin alpha-1B chain / 0.939
4ihj GTPTubulin alpha-1B chain / 0.937
4o4l GTPTubulin alpha-1B chain / 0.918
4tv9 GTPTubulin alpha-1B chain / 0.917
4o4i GTPTubulin alpha-1B chain / 0.907
4iij GTPTubulin alpha-1B chain / 0.890
3zid GDPTubulin-like protein CetZ / 0.887
4wbn GTPTubulin alpha-1B chain / 0.885
5itz GTPTubulin alpha-1B chain / 0.873
4yj2 GTPTubulin alpha-1B chain / 0.809
4b45 GSPTubulin-like protein CetZ2 / 0.768
1z5w GTPTubulin gamma-1 chain / 0.739
1z5v GSPTubulin gamma-1 chain / 0.716
2r6r GDPCell division protein FtsZ / 0.700
4u3j GTPTubulin beta chain / 0.688
1w5a GTPCell division protein FtsZ 1 / 0.677
4ei7 GDPPlasmid replication protein RepX / 0.677
2bbw GP5Adenylate kinase 4, mitochondrial / 0.673
4kwe GDPCell division protein FtsZ / 0.672
4ffb GTPTubulin alpha-1 chain / 0.662
1jsz NDMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2.1.1.57 0.661