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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bw2 FMN Putative 2-nitropropane dioxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bw2 FMNPutative 2-nitropropane dioxygenase / 1.098
3bw3 FMNPutative 2-nitropropane dioxygenase / 1.057
3bw4 FMNPutative 2-nitropropane dioxygenase / 1.056
4q4k FMNUncharacterized protein / 0.909
2z6i FMN2-nitropropane dioxygenase / 0.751
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.730
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.726
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.725
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.711
3l5l FMNXenobiotic reductase / 0.694
4utk FNRXenobiotic reductase / 0.692
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.687
2gjn FMNNitronate monooxygenase 1.13.12.16 0.683
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.681
4yco FMNtRNA-dihydrouridine(16) synthase / 0.676
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.672
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.668
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.665
4utl FNRXenobiotic reductase / 0.665
4uth FMNXenobiotic reductase / 0.661
4utm FNRXenobiotic reductase / 0.661
3n14 FMNXenobiotic reductase / 0.660
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.659
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.655
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.650