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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bqc EMO Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bqc EMOCasein kinase II subunit alpha 2.7.11.1 0.985
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.924
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.915
3c13 EMOCasein kinase II subunit alpha 2.7.11.1 0.908
1m2p HNACasein kinase II subunit alpha 2.7.11.1 0.749
3fl5 TXQCasein kinase II subunit alpha 2.7.11.1 0.723
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.673
4mf0 29ZTyrosine-protein kinase ITK/TSK 2.7.10.2 0.662
2fum MIXSerine/threonine-protein kinase PknB 2.7.11.1 0.659
4ztv TA7Anthranilate phosphoribosyltransferase / 0.654