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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bgc LJH Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bgc LJHGag-Pol polyprotein 3.4.23.16 1.397
3bvb 017Gag-Pol polyprotein 3.4.23.16 0.748
3nyg 2NCGag-Pol polyprotein 3.4.23.16 0.715
3nuj 478Gag-Pol polyprotein 3.4.23.16 0.714
3jvy 017Gag-Pol polyprotein 3.4.23.16 0.708
3saa 77FProtease / 0.708
3nuo 478Gag-Pol polyprotein 3.4.23.16 0.705
4dqc 017Gag-Pol polyprotein / 0.705
1b6k PI5Gag-Pol polyprotein 3.4.23.16 0.704
3ckt YDPGag-Pol polyprotein 3.4.23.16 0.704
4q1y 017Gag-Pol polyprotein 3.4.23.16 0.701
1t7i 017Gag-Pol polyprotein 3.4.23.16 0.697
2avm 2NCGag-Pol polyprotein 3.4.23.16 0.697
2ien 017Gag-Pol polyprotein 3.4.23.16 0.697
2aoe 0Q4Gag-Pol polyprotein 3.4.23.16 0.696
2f80 017Gag-Pol polyprotein 3.4.23.16 0.696
3t3c 017Gag-Pol polyprotein 3.4.23.16 0.691
3lzu 017Gag-Pol polyprotein 3.4.23.16 0.690
3o9h K2EGag-Pol polyprotein / 0.690
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.688
3hzc 2NCProtease / 0.688
1m0b 0ZQGag-Pol polyprotein 3.4.23.16 0.686
3oxv 478Gag-Pol polyprotein 3.4.23.16 0.684
4dqf 017Gag-Pol polyprotein / 0.683
4rvj 478Protease / 0.682
4djq M86Pol polyprotein / 0.679
2i0d MUTProtease / 0.678
2i4u DJRProtease / 0.678
3ekv 478Gag-Pol polyprotein 3.4.23.16 0.678
3sa5 A69Protease / 0.668
3o9e A60Pol polyprotein / 0.665
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.663
3lzs 017Gag-Pol polyprotein 3.4.23.16 0.662
3ec0 GRLGag-Pol polyprotein 3.4.23.47 0.661
3o9f K2DGag-Pol polyprotein / 0.661
3qrs NK8Gag-Pol polyprotein 3.4.23.16 0.661
3ucb 017Gag-Pol polyprotein / 0.659
2i4d QFIProtease / 0.658
2qi7 MZ9Gag-Pol polyprotein / 0.658
1xl2 189Gag-Pol polyprotein 3.4.23.16 0.657
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.657
3ekp 478Gag-Pol polyprotein 3.4.23.16 0.655
3psu LJGGag-Pol polyprotein 3.4.23.16 0.655
3r3b 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.655
2qi3 MZ5Gag-Pol polyprotein / 0.654
1ffi 2NCGag-Pol polyprotein 3.4.23.16 0.653
3o99 K13Pol polyprotein / 0.652
2qi0 MZ3Gag-Pol polyprotein / 0.651
3lzv 017Gag-Pol polyprotein 3.4.23.16 0.651