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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b1d PLS BetaC-S lyase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b1d PLSBetaC-S lyase / 1.168
1c7o PPGHemolysin / 0.828
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.806
1x28 PGUAspartate aminotransferase 2.6.1.1 0.760
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.758
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.730
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.727
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.689
4wxf PLGSerine hydroxymethyltransferase / 0.674
4bqw QNMEgl nine homolog 1 / 0.665
1rx2 FOLDihydrofolate reductase 1.5.1.3 0.659
2r2n KYNKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.653
1rf7 DHFDihydrofolate reductase 1.5.1.3 0.650
1rx5 DDFDihydrofolate reductase 1.5.1.3 0.650