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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3akd CDP Cytidylate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3akd CDPCytidylate kinase / 1.138
3ake C5PCytidylate kinase / 0.807
4qnr ATPPsp operon transcriptional activator / 0.686
1z5c ADPType 2 DNA topoisomerase 6 subunit B / 0.682
2cmk CDPCytidylate kinase 2.7.4.25 0.681
1ake AP5Adenylate kinase / 0.677
2v8p CDP4-diphosphocytidyl-2-C-methyl-D-erythritol kinase / 0.667
2anb 5GPGuanylate kinase 2.7.4.8 0.666
4m69 ANPReceptor-interacting serine/threonine-protein kinase 3 2.7.11.1 0.659
4wuc ANPDNA gyrase subunit B / 0.654
4wud ANPDNA gyrase subunit B / 0.653
4jsy GTPMetallophosphoesterase / 0.651