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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ahn 3A1 Oligopeptidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ahn 3A1Oligopeptidase / 1.378
3aho 3A2Oligopeptidase / 0.928
4ca5 3EFAngiotensin-converting enzyme 3.2.1 0.790
4bxk 1IUAngiotensin-converting enzyme 3.2.1 0.784
4ca7 3EFAngiotensin-converting enzyme 3.4.15.1 0.764
3nxq RX4Angiotensin-converting enzyme 3.2.1 0.749
4ca8 3ESAngiotensin-converting enzyme 3.4.15.1 0.735
2x97 RX4Angiotensin-converting enzyme 3.4.15.1 0.731
4ca6 3EFAngiotensin-converting enzyme 3.2.1 0.728
2xyd 3ESAngiotensin-converting enzyme 3.2.1 0.700
2x96 RX3Angiotensin-converting enzyme 3.4.15.1 0.697
3bkk KAFAngiotensin-converting enzyme 3.2.1 0.688
4bzr K26Angiotensin-converting enzyme 3.2.1 0.680
2oc2 RX3Angiotensin-converting enzyme 3.2.1 0.678
2xy9 3ESAngiotensin-converting enzyme 3.2.1 0.663
4tmn 0PKThermolysin 3.4.24.27 0.661