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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zvj KOM Catechol O-methyltransferase 2.1.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zvj KOMCatechol O-methyltransferase 2.1.1.6 0.878
3ozt OZZCatechol O-methyltransferase 2.1.1.6 0.767
3oe4 610Catechol O-methyltransferase 2.1.1.6 0.765
3ozr OZRCatechol O-methyltransferase 2.1.1.6 0.765
3ozs OZSCatechol O-methyltransferase 2.1.1.6 0.758
5fhq DNCCatechol O-methyltransferase 2.1.1.6 0.757
3oe5 611Catechol O-methyltransferase 2.1.1.6 0.745
3nw9 637Catechol O-methyltransferase 2.1.1.6 0.743
3a7d FBNCatechol O-methyltransferase 2.1.1.6 0.740
3nwb 659Catechol O-methyltransferase 2.1.1.6 0.740
3nwe 662Catechol O-methyltransferase 2.1.1.6 0.740
3hvk 719Catechol O-methyltransferase 2.1.1.6 0.739
3r6t LU1Catechol O-methyltransferase 2.1.1.6 0.721
3hvi 619Catechol O-methyltransferase 2.1.1.6 0.720
1jr4 CL4Catechol O-methyltransferase 2.1.1.6 0.701
2cl5 BIECatechol O-methyltransferase 2.1.1.6 0.700
3i0a DBHNeutrophil gelatinase-associated lipocalin / 0.665
4e5l DBHPolymerase acidic protein / 0.652