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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zvc SAH Precorrin-3 C17-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zvc SAHPrecorrin-3 C17-methyltransferase / 1.058
2zvb SAHPrecorrin-3 C17-methyltransferase / 1.008
2qbu SAHPrecorrin-2 methyltransferase / 0.897
2ybo SAHMethyltransferase / 0.823
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.815
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.799
1v9a SAHUncharacterized protein / 0.797
2npn SAMPutative cobalamin synthesis related protein / 0.792
3nut SAHPrecorrin-3 methylase / 0.765
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.764
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.722
2e8q SAHDiphthine synthase / 0.708
2ed5 SAHDiphthine synthase / 0.701
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.699
2egl SAHDiphthine synthase / 0.698
2e15 SAHDiphthine synthase / 0.697
2e8r SAHDiphthine synthase / 0.697
2egs SAHDiphthine synthase / 0.697
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.696
2p6k SAHDiphthine synthase / 0.695
2p9d SAHDiphthine synthase / 0.692
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.690
2e4n SAHDiphthine synthase / 0.689
2dsg SAHDiphthine synthase / 0.682
2pcm SAHDiphthine synthase / 0.680
4x3l MTARNA 2'-O ribose methyltransferase / 0.680
2pck SAHDiphthine synthase / 0.678
2dsh SAHDiphthine synthase / 0.673
2ek7 SAHDiphthine synthase / 0.673
2owk SAHDiphthine synthase / 0.673
2ejk SAHDiphthine synthase / 0.670
2p2x SAHDiphthine synthase / 0.670
2owv SAHDiphthine synthase / 0.669
2dsi SAHDiphthine synthase / 0.668
2dxw SAHDiphthine synthase / 0.668
2e07 SAHDiphthine synthase / 0.668
2p5c SAHDiphthine synthase / 0.668
2el0 SAHDiphthine synthase / 0.667
2emr SAHDiphthine synthase / 0.667
2dv7 SAHDiphthine synthase / 0.666
2hut SAHDiphthine synthase / 0.666
4cnf MTASpoU rRNA methylase / 0.666
4cng SAHSpoU rRNA methylase / 0.666
2eh2 SAHDiphthine synthase / 0.664
2eld SAHDiphthine synthase / 0.664
2ha8 SAHProbable methyltransferase TARBP1 / 0.664
2p6d SAHDiphthine synthase / 0.664
2z6r SAHDiphthine synthase / 0.664
2dxv SAHDiphthine synthase / 0.663
2dxx SAHDiphthine synthase / 0.663
2e17 SAHDiphthine synthase / 0.663
2e7r SAHDiphthine synthase / 0.663
2ehl SAHDiphthine synthase / 0.663
2pca SAHDiphthine synthase / 0.662
4jl8 ADPAdenylate kinase / 0.662
2en5 SAHDiphthine synthase / 0.659
2egb SAHDiphthine synthase / 0.658
3n4k SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.655
3tw6 ADPPyruvate carboxylase / 0.655
2e8s SAHDiphthine synthase / 0.653
2ek2 SAHDiphthine synthase / 0.652
2eni SAHDiphthine synthase / 0.652
2hux SAHDiphthine synthase / 0.652
2owu SAHDiphthine synthase / 0.652