sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2zfn | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2zfn | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 1.211 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 1.129 | |
| 3q33 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.929 | |
| 1s7n | COA | Acetyl transferase | / | 0.717 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.700 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.688 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.686 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.684 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.684 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.683 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.682 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.681 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.678 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.677 | |
| 3r95 | ACO | MccE protein | / | 0.676 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.675 | |
| 1qsr | ACO | HAT A1 | / | 0.673 | |
| 1m1d | LYX | HAT A1 | / | 0.670 | |
| 4pzr | COA | Histone acetyltransferase p300 | / | 0.669 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.668 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.664 | |
| 3r96 | ACO | MccE protein | / | 0.662 | |
| 1pu9 | COA | HAT A1 | / | 0.661 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.661 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.661 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.659 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.658 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.657 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.656 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.654 | |
| 1pua | COA | HAT A1 | / | 0.652 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.650 |