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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zd1 T27 Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zd1 T27Gag-Pol polyprotein 2.7.7.49 1.069
4ifv T27Gag-Pol polyprotein 2.7.7.49 1.060
4g1q T27Gag-Pol polyprotein 2.7.7.49 1.044
4kfb T27Gag-Pol polyprotein 2.7.7.49 1.018
4id5 T27Gag-Pol polyprotein 2.7.7.49 1.005
4ig3 T27Gag-Pol polyprotein 2.7.7.49 1.002
5cyq T27Gag-Pol polyprotein 2.7.7.49 0.967
3bgr T27Gag-Pol polyprotein 2.7.7.49 0.922
3mec 65BGag-Pol polyprotein 2.7.7.49 0.828
3med 65BGag-Pol polyprotein 2.7.7.49 0.822
3mee T27Gag-Pol polyprotein 2.7.7.49 0.819
1s6q TPBGag-Pol polyprotein 2.7.7.49 0.795
3qlh T27Gag-Pol polyprotein 2.7.7.49 0.792
2ze2 T27Gag-Pol polyprotein 2.7.7.49 0.752
3meg T27Gag-Pol polyprotein 2.7.7.49 0.737
4i2p G73Gag-Pol polyprotein 2.7.7.49 0.719
3nbp JGZGag-Pol polyprotein 2.7.7.49 0.700
4i2q 1BTGag-Pol polyprotein 2.7.7.49 0.693
1eet BFUGag-Pol polyprotein 2.7.7.49 0.679
1s9e ADBGag-Pol polyprotein 2.7.7.49 0.679
3m8p 65BGag-Pol polyprotein 2.7.7.49 0.673
4e5f 0N7Polymerase acidic protein / 0.660
1rt5 UC2Gag-Pol polyprotein 2.7.7.49 0.657
3m8q DJZGag-Pol polyprotein 2.7.7.49 0.653
2fum MIXSerine/threonine-protein kinase PknB 2.7.11.1 0.651