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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zcq B65 Dehydrosqualene synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zcq B65Dehydrosqualene synthase / 1.197
4f6v ZYMDehydrosqualene synthase / 0.758
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.713
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.680
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.675
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.675
2hld ANPATP synthase subunit alpha, mitochondrial / 0.662
2hld ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.662
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.657
3ahi HTLProbable phosphoketolase / 0.657
3q30 D61Squalene synthase 2.5.1.21 0.656
1f9a ATPNicotinamide-nucleotide adenylyltransferase / 0.652