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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yqj UD1 UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 1.467
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 1.318
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 1.062
4m2a UPGUDP-glucose pyrophosphorylase / 0.791
4g3q UD1Bifunctional protein GlmU / 0.743
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 0.740
2oeg UPGUDP-glucose pyrophosphorylase / 0.727
1fwy UD1Bifunctional protein GlmU / 0.712
4m2b UPGUDP-glucose pyrophosphorylase / 0.706
3dj4 UD1Bifunctional protein GlmU / 0.692
4g3p UD1Bifunctional protein GlmU / 0.691
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.688
3cx6 GDPGuanine nucleotide-binding protein subunit alpha-13 / 0.685
2icy UPGUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.682
3d8v UD1Bifunctional protein GlmU / 0.678
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.661
2v0i UD1Bifunctional protein GlmU / 0.654