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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ykv IK2 Beta-transaminase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ykv IK2Beta-transaminase / 1.101
4aoa IK2Beta-phenylalanine transaminase 2.6.1 1.074
4ao4 PLKBeta-transaminase / 1.003
4adc PLPSuccinylornithine transaminase 2.6.1.81 0.800
4zwm PLPOrnithine aminotransferase, mitochondrial, putative / 0.772
3tfu PL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.755
4jey PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.755
1wkh PPE[LysW]-aminoadipate semialdehyde transaminase / 0.752
2pb2 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.739
1mlz PLPAdenosylmethionine-8-amino-7-oxononanoate aminotransferase 2.6.1.62 0.736
4ba5 PXGProbable aminotransferase / 0.735
4zm3 PLPAminotransferase / 0.712
4jf1 PLPAcetylornithine/succinyldiaminopimelate aminotransferase 2.6.1.11 0.685
2hp2 KE4Glutamate-1-semialdehyde 2,1-aminomutase 5.4.3.8 0.671
3vax PLPUncharacterized protein / 0.669
4eb7 PLPCysteine desulfurase IscS 2 / 0.659
3zrr PXGSerine-pyruvate aminotransferase (AgxT) / 0.655
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.651
1nmq 160Caspase-3 3.4.22.56 0.651