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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yhd TES Androgen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yhd TESAndrogen receptor / 1.060
2ylo TESAndrogen receptor / 0.982
4k7a DHTAndrogen receptor / 0.976
2piu DHTAndrogen receptor / 0.972
2ylq TESAndrogen receptor / 0.972
1t79 DHTAndrogen receptor / 0.956
1t7f DHTAndrogen receptor / 0.949
2q7l TESAndrogen receptor / 0.938
1t76 DHTAndrogen receptor / 0.929
2q7j TESAndrogen receptor / 0.922
2am9 TESAndrogen receptor / 0.919
2qpy DHTAndrogen receptor / 0.904
2z4j DHTAndrogen receptor / 0.881
1gs4 ZK5Androgen receptor / 0.822
2ao6 R18Androgen receptor / 0.805
2pkl DHTAndrogen receptor / 0.801
4oez DHTAndrogen receptor / 0.793
2pip DHTAndrogen receptor / 0.767
1t7t DHTAndrogen receptor / 0.736
2pit DHTAndrogen receptor / 0.732
2piw DHTAndrogen receptor / 0.727
1xq3 R18Androgen receptor / 0.714
1t63 DHTAndrogen receptor / 0.712
2ama DHTAndrogen receptor / 0.702
3zqt TESAndrogen receptor / 0.702
4e5l DBHPolymerase acidic protein / 0.696
1xow R18Androgen receptor / 0.693
2bjf DXCCholoylglycine hydrolase 3.5.1.24 0.686
1e3k R18Progesterone receptor / 0.684
4ofr DHTAndrogen receptor / 0.679
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.676
2q7k TESAndrogen receptor / 0.671
2ylp TESAndrogen receptor / 0.671
4oea DHTAndrogen receptor / 0.670
1xf0 ASDAldo-keto reductase family 1 member C3 / 0.669
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.669
4oed DHTAndrogen receptor / 0.667
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.665
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.663
2aax PDNMineralocorticoid receptor / 0.662
1t7m DHTAndrogen receptor / 0.661
2y02 Y01Beta-1 adrenergic receptor / 0.660
2q7i TESAndrogen receptor / 0.659
3uzz TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.659
2aa7 1CAMineralocorticoid receptor / 0.657
2aa2 AS4Mineralocorticoid receptor / 0.654
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.653
2ab2 SNLMineralocorticoid receptor / 0.653
1t7r DHTAndrogen receptor / 0.650
5hgc HCYUncharacterized protein / 0.650