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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ydw WSH Bromodomain-containing protein 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ydw WSHBromodomain-containing protein 2 / 1.070
2yel WSHBromodomain-containing protein 4 / 0.810
2yem WSHBromodomain-containing protein 4 / 0.758
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4c66 H4CBromodomain-containing protein 4 / 0.734
2yek EAMBromodomain-containing protein 2 / 0.733
4f3i 0S6Bromodomain-containing protein 4 / 0.728
4lrg 1XBBromodomain-containing protein 4 / 0.723
4qzs JQ1Bromodomain-containing protein 4 / 0.715
4c67 L5SBromodomain-containing protein 4 / 0.708
4flp JQ1Bromodomain testis-specific protein / 0.702
4a9m P9MBromodomain-containing protein 2 / 0.700
5dfc EAMBromodomain-containing protein 2 / 0.688
4bjx 73BBromodomain-containing protein 4 / 0.681
4akn S5BBromodomain-containing protein 2 / 0.677
4e5f 0N7Polymerase acidic protein / 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.656
2hvc LGDAndrogen receptor / 0.652
3zyu 1GHBromodomain-containing protein 4 / 0.651