sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2y8l | ADP | 5'-AMP-activated protein kinase subunit gamma-1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2y8l | ADP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.995 | |
| 2y8q | ADP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.918 | |
| 2ya3 | J7V | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.878 | |
| 2v9j | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.784 | |
| 3lfz | ADP | Uncharacterized protein MJ1225 | / | 0.730 | |
| 4eak | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.706 | |
| 3kh5 | ADP | Uncharacterized protein MJ1225 | / | 0.687 | |
| 4eaj | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.685 | |
| 3t4n | ADP | 5'-AMP-activated protein kinase subunit gamma | / | 0.683 | |
| 3kpb | SAM | Uncharacterized protein MJ0100 | / | 0.669 | |
| 2i5b | ADP | Pyridoxine kinase | / | 0.664 | |
| 4azw | SAM | O-antigen chain terminator bifunctional methyltransferase/kinase WbdD | / | 0.662 | |
| 4e2x | SAH | Methyltransferase | / | 0.662 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.660 | |
| 4o9k | CMK | Arabinose 5-phosphate isomerase | / | 0.660 | |
| 3fwr | ADP | Transcriptional repressor CcpN | / | 0.651 | |
| 3fws | ANP | Transcriptional repressor CcpN | / | 0.650 |