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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y4m GDX Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y4m GDXUncharacterized protein / 1.100
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.827
2bo8 GDXMannosylglycerate synthase / 0.789
2y4l GDPUncharacterized protein / 0.747
2y4k GDPUncharacterized protein / 0.721
2bo7 GDPMannosylglycerate synthase / 0.717
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.693
3o3p GDDGlycosyl transferase, family 2 / 0.665
2wvl GDDMannosyl-3-phosphogylcerate synthase / 0.657