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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y04 68H Beta-1 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y04 68HBeta-1 adrenergic receptor / 0.990
2y03 5FWBeta-1 adrenergic receptor / 0.805
2y02 WHJBeta-1 adrenergic receptor / 0.728
3nya JTZBeta-2 adrenergic receptor / 0.699
3p0g P0GBeta-2 adrenergic receptor / 0.694
2vt4 P32Beta-1 adrenergic receptor / 0.678
2ycz I32Beta-1 adrenergic receptor / 0.678
4ami G90Beta-1 adrenergic receptor / 0.676
3d4s TIMBeta-2 adrenergic receptor / 0.675
4ldl XQCBeta-2 adrenergic receptor / 0.666
2ycy P32Beta-1 adrenergic receptor / 0.664
4e5l DBHPolymerase acidic protein / 0.661
2ycw CAUBeta-1 adrenergic receptor / 0.655
2y01 Y00Beta-1 adrenergic receptor / 0.653