Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x5z GDD Mannose-1-phosphate guanylyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x5z GDDMannose-1-phosphate guanylyltransferase / 1.282
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.785
2oi6 UD1Bifunctional protein GlmU / 0.725
1yp4 ADQGlucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic 2.7.7.27 0.702
2oeg UPGUDP-glucose pyrophosphorylase / 0.699
2y4m GDXUncharacterized protein / 0.693
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.692
2v0i UD1Bifunctional protein GlmU / 0.688
4m2b UPGUDP-glucose pyrophosphorylase / 0.683
2wvm GDDMannosyl-3-phosphogylcerate synthase / 0.682
4g3p UD1Bifunctional protein GlmU / 0.671
3dj4 UD1Bifunctional protein GlmU / 0.664
3o3p GDDGlycosyl transferase, family 2 / 0.663
4g3q UD1Bifunctional protein GlmU / 0.663
1fwy UD1Bifunctional protein GlmU / 0.661
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.659
2bo8 GDXMannosylglycerate synthase / 0.657
3ckq UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.652
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 0.651
2y4k GDPUncharacterized protein / 0.650