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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wzm NA7 Uncharacterized oxidoreductase MSMEG_2407/MSMEI_2346

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wzm NA7Uncharacterized oxidoreductase MSMEG_2407/MSMEI_2346 / 1.206
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.725
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.693
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 0.693
4l1x NAPAldo-keto reductase family 1 member C2 / 0.690
1s1p NAPAldo-keto reductase family 1 member C3 / 0.680
4p5b FADFlavin-dependent thymidylate synthase / 0.670
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.669
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.660
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.659
1rpn NDPGDP-mannose 4,6-dehydratase / 0.657
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.657
4jtq NAPAldo-keto reductase family 1 member C2 / 0.656
1s1r NAPAldo-keto reductase family 1 member C3 / 0.653
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.650
4ajj 88RL-lactate dehydrogenase A chain 1.1.1.27 0.650