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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wvm GDD Mannosyl-3-phosphogylcerate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wvm GDDMannosyl-3-phosphogylcerate synthase / 1.242
2wvl GDDMannosyl-3-phosphogylcerate synthase / 1.016
4y6n UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.742
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.731
2zu8 GDDMannosyl-3-phosphoglycerate synthase 2.4.1.217 0.723
3o3p GDDGlycosyl transferase, family 2 / 0.699
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.682
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.679
2zu9 GDPMannosyl-3-phosphoglycerate synthase 2.4.1.217 0.673
3dzv ADPHydroxyethylthiazole kinase / 0.659
2j7p GNPSignal recognition particle protein / 0.658
2j7p GNPSignal recognition particle receptor FtsY / 0.658
2x60 GTPMannose-1-phosphate guanylyltransferase / 0.657
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.655
3q2k NAIProbable oxidoreductase / 0.653