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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wo8 077 Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wo8 077Macrophage metalloelastase 3.4.24.65 0.885
2woa 576Macrophage metalloelastase 3.4.24.65 0.767
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
2wo9 068Macrophage metalloelastase 3.4.24.65 0.744
4guy KLJMacrophage metalloelastase 3.4.24.65 0.707
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.697
4i03 L88Macrophage metalloelastase 3.4.24.65 0.693
1hy7 MBSStromelysin-1 3.4.24.17 0.676
2wo8 023Macrophage metalloelastase 3.4.24.65 0.672
1c8t TR1Stromelysin-1 3.4.24.17 0.665
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.663
1b3d S27Stromelysin-1 3.4.24.17 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3lik EEGMacrophage metalloelastase 3.4.24.65 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660