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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wi4 ZZ4 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wi4 ZZ4Heat shock protein HSP 90-alpha / 0.953
4e5i 0N9Polymerase acidic protein / 0.744
2wi6 ZZ6Heat shock protein HSP 90-alpha / 0.693
2xhr C0PHeat shock protein HSP 90-alpha / 0.685
3rlr 3RRHeat shock protein HSP 90-alpha / 0.684
3rlp 3RPHeat shock protein HSP 90-alpha / 0.680
3r4p FU7Heat shock protein HSP 90-alpha / 0.679
3wha WHAHeat shock protein HSP 90-alpha / 0.666
2wi7 2KLHeat shock protein HSP 90-alpha / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3r4o FU3Heat shock protein HSP 90-alpha / 0.659