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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2we3 DUT Deoxyuridine 5'-triphosphate nucleotidohydrolase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 1.148
4wrk DUPDUTPase / 0.880
4gv8 DUPDUTPase / 0.831
1xs4 DCPdCTP deaminase / 0.749
2qxx TTPdCTP deaminase 3.5.4.13 0.737
2ol0 DUDDUTP pyrophosphatase / 0.729
2j4q TTPdCTP deaminase / 0.720
2v9x DUTdCTP deaminase / 0.720
1snf UMPDeoxyuridine 5'-triphosphate nucleotidohydrolase 3.6.1.23 0.719
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.719
4a6a TTPdCTP deaminase 3.5.4.13 0.717
4xjc TTPdCTP deaminase / 0.717
1xje TTPVitamin B12-dependent ribonucleotide reductase / 0.702
1yxq ATPActin, alpha skeletal muscle / 0.688
3b05 IPEIsopentenyl-diphosphate delta-isomerase / 0.665
3ar4 ATPSarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.657
4a61 ANPPlasmid segregation protein ParM / 0.657
5i4n ATPTyrosine-protein kinase JAK2 / 0.657
4fvr ATPTyrosine-protein kinase JAK2 / 0.656
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.656
1vyq DUXDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.655
4fvq ATPTyrosine-protein kinase JAK2 / 0.654
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.651
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.650