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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wbg LGS Beta-glucosidase A 3.2.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wbg LGSBeta-glucosidase A 3.2.1.21 1.091
3vil SA0Beta-glucosidase / 0.905
2e40 LGCBeta-glucosidase 1A 3.2.1.21 0.895
3ptq NFGBeta-glucosidase 12 / 0.830
4f79 P53Putative phospho-beta-glucosidase / 0.789
3ai0 PNWBeta-glucosidase / 0.779
2xwe AMFGlucosylceramidase 3.2.1.45 0.763
3zj6 VM2Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.749
2vrj NCWBeta-glucosidase A 3.2.1.21 0.744
2j7d GI1Beta-glucosidase A 3.2.1.21 0.741
3zj7 C1KStrictosidine-O-beta-D-glucosidase 3.2.1.105 0.729
1i24 UPGUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.726
2wcg MT5Glucosylceramidase 3.2.1.45 0.724
2oyl IDCEndoglycoceramidase II / 0.720
3u57 DH8Raucaffricine-O-beta-D-glucosidase 3.2.1.125 0.708
2j7c IDEBeta-glucosidase A 3.2.1.21 0.691
3gxf IFMGlucosylceramidase 3.2.1.45 0.675
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.674
4gn8 ASORegucalcin 3.1.1.17 0.672
3emz HXHEndo-1,4-beta-xylanase B 3.2.1.8 0.664
1krv 147Galactoside O-acetyltransferase 2.3.1.18 0.662
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.659
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.654
5av4 GENDeath-associated protein kinase 1 2.7.11.1 0.652
3vd7 GTZBeta-galactosidase 3.2.1.23 0.650