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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w17 I19 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w17 I19Cyclin-dependent kinase 2 2.7.11.22 1.051
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.808
2vv9 IM9Cyclin-dependent kinase 2 2.7.11.22 0.756
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.716
2xmy CDKCyclin-dependent kinase 2 2.7.11.22 0.705
2uzd C85Cyclin-dependent kinase 2 2.7.11.22 0.690
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.683
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.675
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.668
3nux 3NVCyclin-dependent kinase 6 2.7.11.22 0.667
1oir HDYCyclin-dependent kinase 2 2.7.11.22 0.663
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.655
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.654