Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w05 FRT Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.880
2w17 I19Cyclin-dependent kinase 2 2.7.11.22 0.793
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.727
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.700
3nux 3NVCyclin-dependent kinase 6 2.7.11.22 0.677
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.672
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.671
3nup 3NUCyclin-dependent kinase 6 2.7.11.22 0.667
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.661
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.658
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.657
1h1s 4SPCyclin-dependent kinase 2 2.7.11.22 0.655
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.653
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.652
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.652