sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 1.453 | |
| 2vqy | ACO | AAC(6')-Ib | / | 0.872 | |
| 2qir | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.821 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.811 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.798 | |
| 2bue | COA | AAC(6')-Ib | / | 0.791 | |
| 1pu9 | COA | HAT A1 | / | 0.761 | |
| 3r96 | ACO | MccE protein | / | 0.761 | |
| 3r95 | ACO | MccE protein | / | 0.760 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.754 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.754 | |
| 1qsr | ACO | HAT A1 | / | 0.740 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.736 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.736 | |
| 3f8k | COA | Uncharacterized protein | / | 0.730 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.726 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.717 | |
| 1qsn | COA | HAT A1 | / | 0.715 | |
| 1pua | COA | HAT A1 | / | 0.714 | |
| 1s7n | COA | Acetyl transferase | / | 0.709 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.705 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.705 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.704 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.702 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.702 | |
| 4ucn | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.701 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.691 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.687 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.684 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.683 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.682 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.681 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.680 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.679 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.679 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.678 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.673 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.671 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.667 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.664 | |
| 2zfn | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.664 | |
| 1m1d | LYX | HAT A1 | / | 0.663 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.663 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.662 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.657 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.657 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.655 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.655 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.655 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.651 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.651 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.650 | |
| 3cz7 | ACO | Histone acetyltransferase RTT109 | 2.3.1.48 | 0.650 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.650 |