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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vte IK4 UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vte IK4UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.966
2vtd LKMUDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.834
2y67 N21UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.811
2uup LK4UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.792
2y66 N04UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.768
2uuo LK3UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.711
2y1o T26UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.685
2jfh LK1UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.655
2xpc 051UDP-N-acetylmuramoylalanine--D-glutamate ligase 6.3.2.9 0.654