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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vs5 GDU N-acetyllactosaminide alpha-1,3-galactosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vs5 GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.314
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 1.109
5c1g GDUHisto-blood group ABO system transferase / 1.054
5c8r UPGHisto-blood group ABO system transferase / 0.979
3zgf IUGHisto-blood group ABO system transferase / 0.947
5c4c UPGHisto-blood group ABO system transferase / 0.947
5c3a URMHisto-blood group ABO system transferase / 0.942
5c4f UPGHisto-blood group ABO system transferase / 0.933
5c48 URMHisto-blood group ABO system transferase / 0.914
3v0m 5GWHisto-blood group ABO system transferase / 0.912
3v0p 4GWHisto-blood group ABO system transferase / 0.895
5c47 URMHisto-blood group ABO system transferase / 0.895
5c3b URMHisto-blood group ABO system transferase / 0.886
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.872
3v0o 4GWHisto-blood group ABO system transferase / 0.870
3v0n 4GWHisto-blood group ABO system transferase / 0.865
4kc1 WS1Histo-blood group ABO system transferase / 0.856
5c4b UPGHisto-blood group ABO system transferase / 0.837
5c1l GDUHisto-blood group ABO system transferase / 0.829
4kc2 WS2Histo-blood group ABO system transferase / 0.806
1zdf UPGGlycogenin-1 2.4.1.186 0.797
5c1h GDUHisto-blood group ABO system transferase / 0.797
3rmw UPGGlycogenin-1 2.4.1.186 0.794
1zdg UPGGlycogenin-1 2.4.1.186 0.791
1g93 UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.779
3t7o UPGGlycogenin-1 2.4.1.186 0.732
1ss9 UPFLgtC / 0.698
1oqm UD2Beta-1,4-galactosyltransferase 1 / 0.673
3tw6 ADPPyruvate carboxylase / 0.670
3hdy GDUUDP-galactopyranose mutase / 0.658
1g9r UPFLgtC / 0.657
3tij URINucleoside permease / 0.657
4kc4 WS3Histo-blood group ABO system transferase / 0.652
4pb1 RBVNucleoside permease / 0.651