sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2vle | DZN | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2vle | DZN | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 1.060 | |
| 1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
| 1yy4 | 4NA | Estrogen receptor beta | / | 0.668 | |
| 2jiz | STL | ATP synthase subunit alpha, mitochondrial | / | 0.666 | |
| 2jiz | STL | ATP synthase subunit gamma, mitochondrial | / | 0.666 | |
| 4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
| 2fzk | CTP | Aspartate carbamoyltransferase regulatory chain | / | 0.650 |