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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v7t SAH 5'-fluoro-5'-deoxy-adenosine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v7t SAH5'-fluoro-5'-deoxy-adenosine synthase / 1.399
2v7u SAM5'-fluoro-5'-deoxy-adenosine synthase / 1.125
3h0v M2TS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.662
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.659
4fvr ATPTyrosine-protein kinase JAK2 / 0.651
4rv9 SAHD-mycarose 3-C-methyltransferase / 0.651