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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v51 LAB Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v51 LABActin, alpha skeletal muscle / 1.067
4b1v LABActin, alpha skeletal muscle / 0.997
4h0y LARActin, alpha skeletal muscle / 0.974
2v52 LABActin, alpha skeletal muscle / 0.972
4h0t LARActin, alpha skeletal muscle / 0.923
4b1u LABActin, alpha skeletal muscle / 0.906
1rdw LARActin, alpha skeletal muscle / 0.880
3sjh LARActin, alpha skeletal muscle / 0.876
1esv LARActin, alpha skeletal muscle / 0.867
4h03 LARActin, alpha skeletal muscle / 0.867
2q0u LABActin, alpha skeletal muscle / 0.856
4gy2 LARActin, alpha skeletal muscle / 0.770
1sqk LARActin, alpha skeletal muscle / 0.739
1ijj LARActin, alpha skeletal muscle / 0.707