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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v0i UD1 Bifunctional protein GlmU

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2v0i UD1Bifunctional protein GlmU / 1.225
4g3q UD1Bifunctional protein GlmU / 0.932
3dj4 UD1Bifunctional protein GlmU / 0.930
1hv9 UD1Bifunctional protein GlmU / 0.885
3spt UD1Bifunctional protein GlmU / 0.883
3d8v UD1Bifunctional protein GlmU / 0.868
4g3s UD1Bifunctional protein GlmU / 0.846
2oi6 UD1Bifunctional protein GlmU / 0.840
4g3p UD1Bifunctional protein GlmU / 0.803
1fwy UD1Bifunctional protein GlmU / 0.793
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 0.752
4ho8 UPGGlucose-1-phosphate thymidylyltransferase / 0.707
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.688
1iin UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.678
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.675
2oeg UPGUDP-glucose pyrophosphorylase / 0.672
4ho9 GDUGlucose-1-phosphate thymidylyltransferase / 0.666
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.654
4ho2 THMGlucose-1-phosphate thymidylyltransferase / 0.653
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.651
4amj CVDBeta-1 adrenergic receptor / 0.650