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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uvz GVJ cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uvz GVJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.964
2vnw M01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.763
2uw0 GVKcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.718
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.703
2vo3 M04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.690
3zo1 SIJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
4e5f 0N7Polymerase acidic protein / 0.660
3juh ANPCasein kinase II subunit alpha 2.7.11.1 0.658
3mvh WFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.657
2vo7 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.652