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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uuv FAD Alkyldihydroxyacetonephosphate synthase 2.5.1.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2uuv FADAlkyldihydroxyacetonephosphate synthase 2.5.1.26 1.509
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.047
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 1.045
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.996
2gqt FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.948
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.918
3pm9 FADPutative oxidoreductase / 0.915
4jb1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.910
3tx1 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.880
4aut FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.829
4f4q FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.800
4feh FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.800
4ysw FADXanthine dehydrogenase/oxidase / 0.780
1f0x FADD-lactate dehydrogenase 1.1.1.28 0.774
4fdn FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.766
1wyg FADXanthine dehydrogenase/oxidase / 0.746
1ffu FADCarbon monoxide dehydrogenase medium chain / 0.742
1hsk FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.741
4fdp FADDecaprenylphosphoryl-beta-D-ribose oxidase / 0.732
4jay FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.704
4zoh FADPutative oxidoreductase FAD-binding subunit / 0.693
1p3d ANPUDP-N-acetylmuramate--L-alanine ligase 6.3.2.8 0.668
2bl4 NADLactaldehyde reductase 1.1.1.77 0.657
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.651
1mbt FADUDP-N-acetylenolpyruvoylglucosamine reductase 1.3.1.98 0.651
1h63 FMNPentaerythritol tetranitrate reductase / 0.650