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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtk GLL Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtk GLLStreptavidin / 0.741
2izk GLLStreptavidin / 0.729
2rti GLLStreptavidin / 0.710
1i9h BNIStreptavidin / 0.680
1lcw SHMStreptavidin / 0.679
2rte BTNStreptavidin / 0.674
2rtg BTNStreptavidin / 0.673
2izg BTNStreptavidin / 0.672
2izi BTNStreptavidin / 0.672
2rtf BTNStreptavidin / 0.672
1swn BTNStreptavidin / 0.671
2rtd BTNStreptavidin / 0.670
2uyw BTNAvd protein / 0.666
2izj BTNStreptavidin / 0.657
3kqb LGJCoagulation factor X 3.4.21.6 0.657
2izh BTNStreptavidin / 0.656
3rdq DTBStreptavidin / 0.655
1y52 BTNAvidin-related protein 4/5 / 0.654
3ew2 BTNHypothetical conserved protein / 0.654
3wyq BTNStreptavidin / 0.654
4yvb BTNStreptavidin / 0.654
2izf BTNStreptavidin / 0.653
2fhl BNIAvidin-related protein 4/5 / 0.652
4dne DTBStreptavidin / 0.652
1n9m BTNStreptavidin / 0.650