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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rtf BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rtf BTNStreptavidin / 1.033
2rtg BTNStreptavidin / 1.029
2rtd BTNStreptavidin / 1.028
2izg BTNStreptavidin / 1.027
2izi BTNStreptavidin / 1.023
2izf BTNStreptavidin / 1.019
2rte BTNStreptavidin / 1.019
2izj BTNStreptavidin / 1.013
2izh BTNStreptavidin / 1.006
3ry2 BTNStreptavidin / 1.002
1nqm BTNStreptavidin / 0.993
1mk5 BTNStreptavidin / 0.992
2y3f BTNStreptavidin / 0.990
4gda BTNStreptavidin / 0.975
1n9m BTNStreptavidin / 0.972
1i9h BNIStreptavidin / 0.967
3wyp BSOStreptavidin / 0.954
4gd9 BTNStreptavidin / 0.949
1swe BTNStreptavidin / 0.944
2zsc BTNTamavidin2 / 0.943
4dne DTBStreptavidin / 0.941
1n43 BTNStreptavidin / 0.937
3rdo BTNStreptavidin / 0.933
3wzn BTNStreptavidin / 0.930
1swn BTNStreptavidin / 0.924
1df8 BTNStreptavidin / 0.919
1lcw SHMStreptavidin / 0.915
4yvb BTNStreptavidin / 0.911
1luq BTNStreptavidin / 0.907
3rdq DTBStreptavidin / 0.905
1stp BTNStreptavidin / 0.894
2rtr IMIStreptavidin / 0.887
2uyw BTNAvd protein / 0.882
1swg BTNStreptavidin / 0.881
3ew2 BTNHypothetical conserved protein / 0.879
2rtp IMIStreptavidin / 0.876
1rxj BNIStreptavidin / 0.875
2fhl BNIAvidin-related protein 4/5 / 0.874
1ndj BTNStreptavidin / 0.873
1y52 BTNAvidin-related protein 4/5 / 0.873
2fhn BNIAvidin-related protein 4/5 / 0.872
1swp BTNStreptavidin / 0.868
1swr BTNStreptavidin / 0.868
1swt BTNStreptavidin / 0.868
2rtq IMIStreptavidin / 0.865
4bcs BTNAvidin-related protein 4/5 / 0.865
2c4i BTNAvidin / 0.861
1mep BTNStreptavidin / 0.849
4bx7 B4FStreptavidin / 0.847
3t2w BTNAvidin/streptavidin / 0.842
1lcz BH7Streptavidin / 0.839
4z28 BTNHoefavidin / 0.833
1rxh BNIStreptavidin / 0.829
2rtn IMIStreptavidin / 0.823
4bj8 BTNAvidin / 0.823
2rto IMIStreptavidin / 0.797
3vgw NVZAvidin / 0.783
2rtl IMIStreptavidin / 0.772
2jgs BTNAvidin / 0.771
1swp BTQStreptavidin / 0.770
3wyq BTNStreptavidin / 0.756
4ggz BTNBll1558 protein / 0.751
1swd BTNStreptavidin / 0.750
2uz2 BTNAvd protein / 0.747
3vhi VHIAvidin / 0.746
1avd BTNAvidin / 0.722
3vhh VHHAvidin / 0.718
3vhm NPKAvidin / 0.695
2rti GLLStreptavidin / 0.679
2izk GLLStreptavidin / 0.677
2rtk GLLStreptavidin / 0.672
2avi BTNAvidin / 0.658
4dve BTNBiotin transporter BioY / 0.651