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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rds 1PL 1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rds 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 1.001
2rdn 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.870
4isu IKMGlutamate receptor 2 / 0.680
1toi HCIAspartate aminotransferase 2.6.1.1 0.671
2j6x FMNLactate oxidase / 0.671
3kkz SAMUncharacterized protein / 0.667
2j41 5GPGuanylate kinase / 0.654
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.652
2prh 238Dihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.650
3cge NDPCoenzyme A disulfide reductase / 0.650
5iot UMPFlavin-dependent thymidylate synthase 2.1.1.148 0.650