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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rd5 NLG Acetylglutamate kinase, chloroplastic 2.7.2.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rd5 NLGAcetylglutamate kinase, chloroplastic 2.7.2.8 0.901
3zzh NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.757
3rib SAHN-lysine methyltransferase SMYD2 / 0.676
3sxj SAMPutative methyltransferase / 0.676
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.673
1toj HCIAspartate aminotransferase 2.6.1.1 0.672
3zzf NLGProtein ARG5,6, mitochondrial 2.7.2.8 0.667
2tpl HPPTyrosine phenol-lyase 4.1.99.2 0.662
2ojt UBAGlutamate receptor ionotropic, kainate 1 / 0.659
3h06 VBPGlutamate receptor 2 / 0.657
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.657
1sdw IYTPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.656
4o6f SAHN-lysine methyltransferase SMYD2 / 0.656
2rdn 1PL1-deoxypentalenic acid 11-beta-hydroxylase 1.14.11.35 0.655
4l65 C2F5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2.1.1.14 0.655
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.654
3h03 UBPGlutamate receptor 2 / 0.654
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.653
4ew3 DXZTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.651