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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rd2 QSI Glutamine--tRNA ligase 6.1.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 1.069
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 1.007
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.934
1euy QSIGlutamine--tRNA ligase 6.1.1.18 0.837
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.752
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.750
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.730
4jxz ATPGlutamine--tRNA ligase 6.1.1.18 0.715
2cv2 GSUGlutamate--tRNA ligase 6.1.1.17 0.713
3akz GSUGlutamate--tRNA ligase 2 / 0.712
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.704
1qru ATPGlutamine--tRNA ligase 6.1.1.18 0.698
3afh GSUGlutamate--tRNA ligase 2 / 0.682
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.669
1xjq ADPBifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 2.7.1.25 0.661
1i6l TYMTryptophan--tRNA ligase 6.1.1.2 0.660
4jyz ATPGlutamine--tRNA ligase 6.1.1.18 0.655
3w0p ADPHygromycin-B 4-O-kinase 2.7.1.163 0.653
1n2h PAJPantothenate synthetase 6.3.2.1 0.651